Publications

2009
2008
2007
2006
2005

2004
2003
2002
2001
2000

2009

Refereed Journal Publications

Zhang L, Gardiner BS, Smith DW, Pivonka P, Grodzinsky AJ, (2009) The Transport of Insulin-like Growth Factor through Cartilage, in Porous Media Applications in Biological Systems and Biotechnology, Editor K. Vafai, to appear.
Zhang L, Gardiner BS, Smith DW, Pivonka P, Grodzinsky AJ, (2009) An integrated model of IGF-I mediated biosynthesis in deforming articular cartilage, A topically issue on Micro and Nanomechanics of Biological and Bio-inspired Materials, Journal of Engineering Mechanics 135(5), 439-449.
Lewis TW, Pivonka P, Smith DW, (2009) Theoretical investigation of the effects of consolidation on contaminant transport through clay barriers, International Journal for Numerical and Analytical Methods in Geomechanics 33(1), 95-116.
Lewis TW, Pivonka P, Fityus SG, Smith DW, (2009) Parametric sensitivity analysis of coupled mechanical consolidation and contaminant transport through clay barriers, Computers and Geotechnics 36(1-2), 31-40.
Pivonka P, Narsilio GA, Li RN, Smith DW, Gardiner B, (2009) Electrodiffusive Transport in Charged Porous Media: From the Particle-Level Scale to the Macroscopic Scale Using Volume Averaging, Journal of Porous Media 12(2),101-118.

2008

Refereed Journal Publications

Evans RG, Gardiner BS, Smith DW, O.Connor PM, (2008) Intrarenal oxygenation: unique challenges and the biophysical basis of homeostasis, American Journal of Physiology-Renal Physiology 295(5), F1259-F1270.
Evans RG, Gardiner BS, Smith DW, O'Connor PM, (2008) Methods for studying the physiology of kidney oxygenation, Clinical and Experimental Pharmacology and Physiology 35(12), 1405-1412.
Wee A, Grayden DB, Zhu YG, Petkovic-Duran K, Smith DW, (2008) A continuous wavelet transform algorithm for peak detection, Electrophoresis 29(20), 4215-4225.
Pivonka P, Zimak J, Smith DW,Gardiner BS, Dunstan CR, Sims NA, Martin TJ, Mundy GR, (2008) Model structure and control of bone remodeling: A theoretical study, Bone 43(2), 249-263.
Zhang, L, Gardiner BS, Smith DW, Pivonka P, Grodzinsky AJ, (2008) A fully coupled poroelastic reactive-transport model of cartilage, Molecular & Cellular Biomechanics 5(2), 133-153.
Zhang L, Gardiner BS, Smith DW, Pivonka P, Grodzinsky AJ, (2008) IGF Uptake with Competitive Binding in Articular Cartilage, Journal of Biological Systems 16(2), 175-195.
Lewis TW, Smith DW, Pivonka P, (2008) Discussion of "Parametric study of one-dimensional solute transport in deformable porous media" by Akram N. Alshawabkeh and Nima Rahbar, Journal of Geotechnical and Geoenvironmental Engineering 134(3), 414-416.
Lewis TW, Pivonka P, Smith DW, (2008) Theoretical investigation of the effects of consolidation on contaminant transport in composite landfill liners. International Journal for Numerical and Analytical Methods in Geomechanics 33(1), 95-116, 2009.
Refereed Conference Publications
Narsilio GA, Smith DW, Mohajeri A, Pivonka P, (2008) Numerical micro-scale modelling of inter-joint swelling pressure. In Y. Potvin, J. Carter, A. Dyskin, R. Jeffrey (eds). Proceedings (Vol II) of the 1^st Southern Hemisphere International Rock Mechanics Symposium (SHIRMS-08), Perth, Australia, 16-19 Sept., pp195-202.
Smith DW, Narsilio GA, Pivonka P, (2008). Numerical particle-scale study of swelling pressure in clays In D.N. Singh (ed.). Geomechanics in the Emerging Social and Technological Age - Proceedings of the 12^th International Association of Computer Methods and Advances in Geomechanics (IACMAG), Goa, India, 16-19 Sept., pp2165-2171.

Conference Presentations - presenter is identified using bold letters
D. Smith, L. Zhang, B. Gardiner, P. Pivonka, A. Grodzinsky, Theoretical investigation of the functional role of IGFBP-3 in modulating the uptake of IGF-I by articular cartilage, 54^th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, USA, 2-5 March, 2008.
D. Smith, P. Pivonka, J. Zimak, B. Gardiner, C. Dunstan, N. Sims, T.J. Martin, G. Mundy, A proposal for the dual action of PTH in bone remodelling based on a bone cell dynamics model, European Conference on Mathematical and Theoretical Biology (ECMTB-08), Edinburgh, Scotland, 29 June . 4 July 2008.
D. Smith, Y. Wang, P. Pivonka, M. Schuliga, A. Stewart, Computational & experimental investigation of the plasmin activation system, XIXth Congress of the International Society for Fibrinolysis and Proteolysis, Vienna, Austria, 6^th- 10^th July, 2008.
D. Smith& P. Pivonka, Review of computational modeling in bone biology: from intracellular signaling to tissue level, 18^th Annual Meeting of the Australian and New Zealand Bone and Mineral Society (ANZBMS), Melbourne, Australia, 28-31 August, 2008. (invited keynote)
P. Pivonka, J. Zimak, D. Smith, B. Gardiner, C. Dunstan, N. Sims, T.J. Martin, G. Mundy, Theoretical investigation of the role of the RANK-RANKL-OPG system in bone remodeling, 18^th Annual Meeting of the Australian and New Zealand Bone and Mineral Society (ANZBMS), Melbourne, Australia, 28-31 August, 2008. (invited keynote)
P. Pivonka, J Zimak, D. Smith, X. Shen, C. Dunstan, Theoretical modeling of the treatment of osteoporosis with Denosumab using a coupled pharmacokinetic-bone cell population model, 18^th Annual Meeting of the Australian and New Zealand Bone and Mineral Society (ANZBMS), Melbourne, Australia, 28-31 August, 2008. (poster presentation)
Y. Wang,P. Pivonka, D.W Smith, Computational Modeling of Multiple Myeloma and the Bone Microenvironment, Australian and New Zealand Orthopaedic Research Society Meeting (ANZORS 08), Brisbane, Queensland, 16-17 November, 2008. (oral)
L. Zhang, B. Gardiner, D.W Smith, P. Pivonka. An integrated model of IGF-I and mechanical loading mediated biosythesis in a deformed articular cartilage, Australian and New Zealand Orthopaedic Research Society Meeting (ANZORS 08), Brisbane, Queensland, 16-17 November, 2008. (oral)
L. Zhang, B. Gardiner, D.W Smith, P. Pivonka. Can cartilage tune its exposure to IGF through IGF binding proteins?, Australian and New Zealand Orthopaedic Research Society Meeting (ANZORS 08), Brisbane, Queensland, 16-17 November, 2008. (oral)
P. Pivonka and D. Smith, Mathematical modeling of the bone remodeling process, Australian Health and Medical Research Congress (AHMRC & ANZORS 08), Brisbane, Queensland, 16-21 November, 2008. (invited keynote)
T.W. Lewis, P. Pivonka, D. Smith, and S.G. Fityus. Coupled mechanical consolidation and contaminant transport modeling of composite barrier systems: a parametric sensitivity analysis. ASCE . Geocongress-08, New Orleans, Louisiana, USA 9-12 March, 2008.
G.A.Narsilio, D.W. Smith, P. Pivonka Numerical particle-scale study of swelling pressure in clay. 12^th International Conference of the International Association for Computer Methods and Advances in Geomechanics (IACMAG), 1-6 October, Goa, India, 2008. (oral)
G.A. Narsilio, D.W. Smith, A. Mohajeri, P. Pivonka. Numerical micro-scale modelling of inter-joint swelling pressure. 1^st Southern Hemisphere International Rock Mechanics Symposium (SHIRMS-08), 16-19 September, Perth, Australia, 2008. (oral)

2007

Refereed Journal Publications

Gardiner B, Smith DW, Pivonka P, Grodzinsky A, Frank E, Zhang L, (2007) Solute transport in cartilage undergoing cyclic deformation, Computer Methods of Biomechanics and Biomedical Engineering 10, 265-278.
Zhang L, Gardiner B, Smith DW, Pivonka P, Grodzinsky AJ, (2007) The effect of cyclic deformation and solute binding on solute transport in cartilage, Archives of Biochemistry and Biophysics 457(1), 47-56.
Pivonka P, Smith DW, Gardiner B, (2007) Investigation of Donnan Equilibrium in charged porous materials-a scale transition analysis, Transport in Porous Media 69(2), 215-237.
Wells T, Fityus SG, Smith DW, (2007) The use of in situ air flow measurements to study permeability in cracked clay soils, ASCE Journal of Geotechnical and Geoenvironmental Engineering 133(12), 1577-1586.
Narsilio G, Li R, Pivonka P, Smith DW, (2007) Comparative Study of Methods Used to Estimate Ionic Diffusion Coefficients Using Migration Tests, Cement and Concrete Research 37(8), 1152-1163.
Refereed Conference Publications
Smith DW , Zhang L, Gardiner BS, Pivonka P, Grodzinksy AJ, (2007) Effects of ECM binding on solute transport in cyclically deformed cartilage, The 53rd Annual Meeting of the Orthopaedic Research Society, San Diego USA, 11-14^th February, Paper 0101.
Shen X, Smith DW, Smith R, Smith J, (2007) Using Computer to reveal relationships in multiple series of measurements, Proceedings of IEEE 4th International Conference on BioMedical Visualization, p60-68.
Shen X, Narsilio G, Wang H, Smith DW, Egan G, (2007) Using Numerical Model to Predict Hydrocephalus Based on MRI Images, Proceedings of IEEE 6th International Conference on Functional Biomedical Imaging, p51-54.
Pivonka P, Narsillio G, Li R, Smith DW, (2007) Theoretical study of methods used to determine ionic diffusion coefficients in concrete using migration tests, In D.R.J. Owen and E. Oñ and B. Suáz, editors, Proceedings of the 9^th International Conference on Computational Plasticity (COMPLAS IX, Barcelona, Spain, 5-7 Sept., 2007), pp 490-493, 2007. (extended abstract)
Narsilio GA, Pivonka P, Smith DW, (2007) Numerical study on electrochemical chloride extraction through temporary DC power supply, 10^th Australia New Zealand Conference on Geomechanics, Brisbane, Australia, 21-24 Oct., Vol. 1, pp374-379.
Pivonka P, Narsilio GA, Smith DW, (2007) Diffusion in charged porous media: macroscopic Poisson-Nernst-Plank equations through up-scaling, 10^th Australia New Zealand Conference on Geomechanics, Brisbane, Australia, 21-24 Oct., Vol. 1, pp190-195.
Pharoah A, Jayarathne R, Connor M, Yuen S, Pivonka P, (2007) The distribution of chemical contaminants in soil around septic tank absorption trenches, Onsite-07 "Innovation and Technology for On-site Systems", Armidale (Wright Centre, University of New England), Australia, 25-27 Sept., pp271-278.
Jayarathne J, Pharoah A, White L, Pivonka P, Yuen S, Connor M, (2007) The hydrological performance of on-site soil absorption systems (OSAS),Onsite-07. "Innovation and Technology for On-site Systems", Armidale (Wright Centre, University of New England), Australia, 25-27 Sept., pp183-190.

Conference Presentations - presenter is identified using bold letters
D.W. Smith, L. Zhang, B.S. Gardiner, P. Pivonka and A.J. Grodzinsky, Effects of ECM binding on solute transport in cyclically deformed cartilage, The 53rd Annual Meeting of the Orthopaedic Research Society, San Diego, USA, 11-14^th February, 2007.
B.S. Gardiner, D. W. Smith and P. Pivonka, Predicting the pre-patterning of cell fates involved in Drosophila respiratory appendage development, 5th Summer Conference on Molecular Mechanisms in Development, Perth, Australia, 2^nd February, 2007.
P. Pivonka, D.W. Smith, B.S. Gardiner, and C.R. Dunstan, Towards a mathematicaldescription of bone remodeling, 2^nd FEBS Advanced Lecture Course on Systems Biology, Gosau, Austria, 10-16 March, 2007.
D.W. Smith, P. Pivonka, B. S. Gardiner, C.R. Dunstan, T.J. Martin, State-of-the-art mathematical modelling approaches applied to bone biology, 17^th Annual Meeting of the Australian and New Zealand Bone and Mineral Society, Queenstown, New Zealand, 9-12 September, 2007.
P. Pivonka, J. Zimak, D. Smith, B. Gardiner, C. Dunstan, N. Sims, T.J. Martin, How does RANKL/OPG receptor expression on osteoblasts modulate bone remodeling? . A theoretical study, ComBio 2007, Sydney, Australia, 22-26 September, 2007.
P. Pivonka, J. Zimak, D. Smith, B. Gardiner, C. Dunstan, N. Sims, T.J. Martin, Numerical study of the effects of PTH dosing type on bone balance, ANZORS-07, Australian and New Zealand Orthopaedic Research Society Meeting, Auckland, New Zealand, 14-17 October, 2007.
P. Pivonka and D.W Smith, Mathematical modelling of bone cell Interactions, Molecular signalling in bone remodelling, Inaugural Asia Pacific Conference 2007, Sydney, Australia, 23-25 Nov., 2007. (invited oral)
P. Pivonka, J. Zimak, D.W Smith, B.S. Gardiner, C.R. Dunstan, T.J. Martin, N.S. Sims, G.R. Mundy, Model Structure and control mechanisms for bone multi-cellular units: a theoretical study, Molecular Modeling - MM 2007, Melbourne, Australia, 27 . 30 Nov., 2007.
Pivonka, T. Lewis, and D.W. Smith, Theoretical investigation of the effects of consolidation on contaminant transport in composite contaminant barriers,Siam conference on Mathematical and Computational Issues in the Geosciences, Santa Fe, USA, 19-22 March, 2007. (invited oral)
G. Narsillio, P. Pivonka, D.W. Smith, Electro-Diffusive transport in charged porous media: from the particle level scale to the macroscopic scale using volume averaging. 2^nd International Conference on Porous Media and its Applications in Science, Engineering and Industry, Kauai, Hawaii, USA, 17-22 June, 2007.
G. Narsillio, P. Pivonka, D.W. Smith, Theoretical investigation of swelling in clay: a microstructural approach. IUTAM Symposium On Swelling And Shrinking of Porous Materials: From Colloid Science to Poromechanics, Petropolis, Brazil, August 6^th-10^th, 2007.
P. Pivonka, G. Narsillio, R. Li, and D.W. Smith, Theoretical study of methods used to determine ionic diffusion coefficients in concrete using migration tests, IX International Conference on Computational Plasticity (COMPLAS IX), Barcelona, Spain, 5-7 September, 2007. (invited)
G.A. Narsilio, P. Pivonka, and D.W. Smith, style='color:black'>Numerical study on electrochemical chloride extraction through temporary DC power supply, 10^th Australia New Zealand Conference on Geomechanics, Brisbane, Australia, 21-24 Oct., 2007. (poster)
P. Pivonka, G.A. Narsilio, D.W. Smith, Diffusion in charged porous media: macroscopic Poisson-Nernst-Plank equations through up-scaling, 10^th Australia New Zealand Conference on Geomechanics, Brisbane, Australia, 21-24 Oct., 2007.
A. Pharoah, R. Jayarathne, M. Connor, S. Yuen and P. Pivonka. The distribution of chemical contaminants in soil around septic tank absorption trenches, Onsite-07 . .Innovation and Technology for On-site Systems., Armidale (Wright Centre, University of New England), Australia, 25-27 Sept., 2007.
R. Jayarathne, A. Parooah, L. White, P. Pivonka, S. Yuen, M. Connor. The hydrological performance of on-site soil absorption systems (OSAS), Onsite-07 . "Innovation and Technology for On-site Systems", Armidale (Wright Centre, University of New England), Australia, 25-27 Sept., 2007.
M. A. Connor, L. A. White, R. Jayarathne, A. Pharaoh, P. Pivonka, J. Rydberg and S.Yuen. How do we ensure a future for septic tanks?, 2^nd IWA-ASPIRE (Asia-Pacific Regional Group Conference & Exhibition) .Water and Sanitation in the Asia-Pacific Region: Opportunities, Challenges and Technology., Perth, Australia, 28.Oct. . 1.Nov., 2007.

2006

Refereed Journal Papers

Imtiaz M, Katnik C, Smith DW, Van-Helden DF, (2006) Role of voltage.dependent store Calcium release in the synchronization of calcium oscillations, Biophysical Journal 90 (1), 1-23.
Gardiner BS, Tordesillas A, (2006) Effects of particle size distribution in a three-dimensional micropolar continuum model of granular media, Powder Technology 161, 110-121.
Huang, W, Fityus SG, Bishop D, Smith DW, Shen D (2006). A finite element parametric study of the consolidation behaviour of a trial embankment on soft clay. ASCE International Journal of Geomechanics 5(6): 328-341.
Fletcher H, Smith DW, Pivonka P (2006). A geochemical model for the adsorption of fluoride onto alumina. ASCE Journal of Environmental Engineering 132 (2): 229-246.
Reitsma M, Cain R, Biggs S, Smith DW (2006). Observed transition from linear to non-linear friction-load behavior using a Lateral Force Microscope. Applied Surface Science 252: 4964-4968. [
Reitsma M, Cain R, Biggs S, Smith DW (2006). Wear of a single asperity using a Lateral Force Microscope. Tribology Letters 24(3): 257-263.
Wells T, Fityus SG, Smith DW (2006). The indirect estimation of saturated hydraulic conductivity of soils, using measurements of gas permeability. I. Laboratory testing with dry granular soils. Australian Journal of Soil Research 44(7): 719-725.
Refereed Conference Publications
L. Zhang, B.S. Gardiner, D. W. Smith, and P. Pivonka. Solute Transport in Cartilage: Effects of Cyclic Deformation and ECM Binding. In CD-ROM Proceedings of the 15^th International Conference on Mechanics in Medicine and Biology (ICMMB-15), pp 171-172, 2006.
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan. Hierarchical model describing bone cell dynamics: application to bone remodeling. In CD-ROM Proceedings of the 15^th International Conference on Mechanics in Medicine and Biology (ICMMB-15), pp 225-226, 2006.
Conference Presentations - presenter is identified using bold letters
P. Pivonka, D. Smith, B. Gardiner, C. Dunstan. Mathematical modeling of bone cell interactions: application to bone remodeling, 4^th Clare Valley Bone Meeting, Clare Valley, South Australia, May 19-21, 2006. (poster + oral)
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan. Numerical investigation of bone cell remodeling by means of a cell population dynamics model. Engineering and Physical Science in Medicine (EPSM), Queensland, Australia,11-21 Sept., 2006. (oral)
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan, N. Sims, T.J. Martin, Mathematical model describing bone cell interactions: application to bone remodeling. ComBio 2006, Queensland, Australia, 24-28 Sept., 2006. (poster)
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan. Role of mathematical modeling in bone biology: from intracellular signaling to tissue level. 16^th Annual Meeting of the Australian and New Zealand Bone and Mineral Society (ANZBMS), Queensland, Australia, 23-26 Oct., 2006. (poster)
L. Zhang, B.S. Gardiner, D.W. Smith, P. Pivonka, The role of solute binding on solute transport in cyclic deformed cartilage, 12th Annual Scientific Meeting of Australian & New Zealand Orthopaedic Research Society (ANZORS), Canberra, Australia, 6-8 Oct., 2006. (oral)
L. Zhang, B.S. Gardiner, D. W. Smith, and P. Pivonka. Solute Transport in Cartilage: Effects of Cyclic Deformation and ECM Binding. 15^th International Conference on Mechanics in Medicine and Biology (ICMMB-15), Singapore, 6-8 Dec., 2006. (oral)
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan. Hierarchical model describing bone cell dynamics: application to bone remodeling. 15^th International Conference on Mechanics in Medicine and Biology (ICMMB-15), Singapore, 6-8 Dec., 2006. (oral)
Gardiner, B.S., Metabolic modelling, 8th Melbourne Bioinformatics Course, 4th-8th September 2006. Invited by Dr Tom Garrett.
Smith, D.W., Systems Biology what can it offer? 8th Melbourne Bioinformatics Course, 4th-8th September 2006. (invited by Dr Tom Garrett)
Gardiner, B.S., Mathematical modelling of intercellular signalling in development and disease. The Peter MacCallum Cancer Institute, 29th June 2006. (invited by Dr Tony Brumby)
SLATTER, E., FITYUS, S.G., SMITH, D.W. (2006) Experimental Determination of Parameters for the Barcelona Basic Model for a reconstituted Kaolin. Unsat Soil Conference 2006.

2005

Refereed Journal Papers

Gardiner BS, Smith DW, Pivonka P (2005) A two-dimensional mathematical model for dorsal appendage cell patterning in Drosophila. Developmental Biology, 283(2): 688-688, 2005.
Pivonka P, Smith DW (2005). Investigation of nanoscale electrohydrodynamic transport phenomena in charged porous media. International Journal for Numerical Methods in Engineering 63 (14): 1975-1990.
Boudreau BP, Algar C, Johnson BD, Croudace I, Reed A, Furukawa Y, Dorgan KM, Jumars PA, Grader AS, Gardiner BS (2005). Bubblegrowth and rise in soft sediments , Geology 33(6): 517-520.
Gardiner BS, Tordesillas A (2005). The link between discrete and continuous modeling of liquid foam at the level of a single bubble Journal of Rheology 49(4): 819-838.
Gardiner BS, Tordesillas A (2005). Micromechanical constitutive modelling of granular media: evolution and loss of contact in particle clusters Journal of Engineering Mathematics 52 (1-3): 93-106.
Refereed Conference Publications
Ch. Hellmich, K. Hofstetter, P. Pivonka. Nanoscaled Elementary Components and their Mechanical Interaction in Biological and Man-Made Composite Materials: Bone, Wood, and ConcreteIn CD-ROM Proceedings of the 2nd International Symposium on Nanotechnology in Construction, 8 pages, RILEM, 2005.
K. Krabbenhoft and P. Pivonka. Numerical aspects of muti-ionic transport in electrolytic solutions, In M. Xie, A. Mouritz, A.A. Khatibi, C. Gardiner, W.K. Chiu, editors, Proceedings of the 4^th Australasian Congress on Applied Mechanics (Melbourne, Australia, February 16-18, 2005), Institute of Materials Engineering, Australasia Ltd., pp 473-478, 2005.
P. Pivonka, D. Smith, and B. Gardiner. Fundamental theoretical study of nanoscale ion transport through charged porous materials: Part I - diffusion, In Y. Abousleiman, A. Cheng, F.-J. Ulm, editors, Proceedings of the 3^rd Biot Conference on Poromechanis (Oklahoma City, USA, May 24-27, 2005), A.A. Balkema Publishers, London, UK, pp 417-422, 2005.
P. Pivonka, D. Smith, and B. Gardiner. Fundamental theoretical study of nanoscale ion transport through charged porous materials: Part II . diffusion-advection, In Y. Abousleiman, A. Cheng, F.-J. Ulm, editors, Proceedings of the 3^rd Biot Conference on Poromechanis (Oklahoma City, USA, May 24-27, 2005), A.A. Balkema Publishers, London, UK, pp 449-453, 2005.
K. Krabbenhoft, P. Pivonka, S.W. Sloan, and D. Smith. Numerical aspects of muti-ionic transport in electrolytic solutions, In Y. Abousleiman, A. Cheng, F.-J. Ulm, editors, Proceedings of the 3^rd Biot Conference on Poromechanis Poromechanis (Oklahoma City, USA, May 24-27, 2005), A.A. Balkema Publishers, London, UK, pp 411-416, 2005.
P. Pivonka, D. Smith, and B. Gardiner. Modeling of Donnan Equilibrium in charged porous materials - a scale transition analysis, In D.R.J. Owen and E. Oñate and B. Suárez, editors, Proceedings of the 8^th International Conference on Computational Plasticity (COMPLAS VIII, Barcelona, Spain, 5-8 September, 2005), pp 147-151, 2005, extended abstract.
P. Pivonka, D. Smith, and B. Gardiner. Upscaling of the Poisson-Nernst-Planck Equations using the Volume Averaging Method, In T.E. Simos, and G. Psihoyios, and Ch. Tsitouras, editors, Proceedings of International Conference on Numerical Analysis and Applied Mathematics 2005 (ICNAAM, Rhodes, Greece, 16-20 September, 2005), pp 443-446, 2005, Wiley-VCH, extended abstract.
D. Smith and P. Pivonka, Theoretical investigation of the influence of a diffuse double-layer on Darcy.s law, In J.M. Huyghe, P.A.C. Raats, and S.C, Cowin. IUTAM Symposium on Physicochemical and Electromechanical Interactions in Porous Materials, Solid mechanics and its applications, Vol. 125, Springer, pp 289-298, 2005.
Conference Presentations - presenter identified using bold letters
Gardiner, B.S., Network modeling and b-catenin, The Wnt signaling workshop, Ludwig Cancer Institute (Melbourne, Australia, 16th of December 2005), invited by Professor Tony Burgess.
Smith, D.W., Computational Biology what can it offer? Walter and Eliza Hall Institute, (Melbourne, Australia, 11th of October 2005), invited by Professor Peter Colman.
Gardiner, B.S., Can cyclic loading enhance the transport of nutrients into cartilage? Department of Bioengineering, Massachusetts Institute of Technology (Cambridge, USA, 5th of August 2005), invited by Professor Alan Grodzinsky.
B.S. Gardiner, D.W. Smith, P. Pivonka and A.J. Grodzinsky. IGF-I transport through a dynamically loaded cartilage and the effect of timescale, Cartilage Innovation Summit 2005, Cleveland, Ohio, USA, May 4-7, 2005.
B.S. Gardiner, D.W. Smith, P. Pivonka. A two-dimensional mathematical model for dorsal appendage cell patterning in Drosophila. Society of Developmental Biology 64^th Annual Meeting, San Fransisco, Jul 27^th. Aug 1^st, 2005.
P. Pivonka, D. Smith, B. Gardiner, and C. Dunstan. Review on signal mechano-transduction in bone - application to bone remodeling, ASCE conference on Mechanics and Materials (McMat), Baton Rouge, Lousiana, USA, June 1-5, 2005. (invited)
Ch. Hellmich, K. Hofstetter and P. Pivonka. Nanoscaled elementary components and their mechanical interaction in biological and man-made composite materials: bone, wood and concrete, 2^nd International Symposium on Nanotechnology in Construction, Bilbao, Spain, 13-16 November, 2005.
P. Pivonka, D. Smith, and B. Gardiner. Fundamental theoretical study of nanoscale ion transport through charged porous materials: diffusion/diffusion-advection, 3^rd Biot conference, Oklahoma City, USA, May 24-27, 2005.
P. Pivonka, D. Smith, and B. Gardiner. Upscaling of the Poisson-Nernst-Planck electro-diffusion equations using the volume averaging method, SIAM conference on Mathematical and Computational Issues in Geoscience, Avignon, France, June 7-10, 2005. (invited)
P. Pivonka, D. Smith, and B. Gardiner. Investigation of Donnan Equilibrium in charged porous materials . a scale transition analysis, VIII International Conference on Computational Plasticity (COMPLAS VIII), Barcelona, Spain, 5-7 September, 2005. (invited)
P. Pivonka, D. Smith, and B.Gardiner. Upscaling of the Poisson-Nernst-Planck equations using the volume averaging method, International Conference on Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, 16-20 September, 2005.

2004

Refereed Journal Papers

Adeeb, S, Ali, A, Shrive, N, Frank, C & Smith, DW (2004), Modeling the behaviour of ligaments: A technical note. Computer Methods in Biomechanics and Biomedical Engineering, 7(1), 33-42.
Adeeb, S. Ali, A., Shrive, N., Frank, C. and Smith, D.W. (2004) Modeling the behaviour of ligaments: A technical note. Computer Methods in Biomechanics and Biomedical Engineering 7(1), 33-42.
Tordesillas A, Walsh SDC, Gardiner BS (2004). Bridging the length scales: micromechanics of granular media. BIT Numerical Mathematics 44: 539-556.
Gardiner BS, Tordesillas A (2004). A Micromechanics of shear bands. International Journal of Solids and Structures 41, pp. 5885-5901.
Tordesillas A, Peters JF, Gardiner BS (2004). Shear band evolution and accumulated microstructural development in Cosserat media. International Journal of Numerical and Analytical Methods in Geomechanics. 28: 981-1010.
Tordesillas A, Peters JF, Gardiner BS (2004). Insights into 1D localisation theory and micromechanical constitutive laws. Geotechnique 54: 327-330.
P. Pivonka, R. Lackner, and H.A. Mang. Concrete subjected to triaxial stress states: application to pull-out analyses. Journal of Engineering Mechanics (ASCE), 130(12), pp 1486-1498, 2004.
P. Pivonka, J.Ozbolt, R. Lackner, and H.A. Mang. Comparative studies of 3D constitutive models for concrete: application to mixed mode fracture. International Journal for Numerical Methods in Engineering, 60(2), pp 549-570, 2004.
P. Pivonka, Ch. Hellmich, and D.W. Smith. Microscopic effects on chloride diffusivity of cement pastes - a scale transition analysis. Cement and Concrete Research, 34(12), pp 2251-2260, 2004.
D.W. Smith, P. Pivonka, Ch. Jungnickel, and S. Fityus. Theoretical analysis of anion exclusion and diffusive transport through platy-clay soils. Transport in Porous Media, 57(3), pp 251-277, 2004.
Jungnickel, C., Smith, D.W. and Fityus, S.G. (2004) "Coupled Multi-ion Electrodiffusion Analysis for Clay Soils" Canadian Geotechnical Journal, Vol 41(2): p. 287-298.
Peters, G. and Smith, D.W. (2004), "The Influence of Advective Transport on Coupled Chemical and Mechanical Consolidation of Clays" Mechanics of Materials Vol 36 (5) p. 467-486.
Fityus, S.G. and Smith, D.W, (2004), "The development of a residual soil profile from a mudstone in a temperate climate" Engineering Geology Vol 74 p 39-56.
Fityus, S. G. and Smith, D. W. and Allman, M. A. (2004) Results from a Reactive Soil Field Site near Newcastle, Australia. ASCE Journal of Geotechnical and Geoenvironmental Engineering Volume 130, Issue 7, pp. 686-695.
Smith, D.W. and Reitsma, M. (2004), "A conceptual model explaining the residual frictional angle in montmorillonitic clay soils" Australian Geomechanics Vol. 39. No. 2 p. 111-119.
Refereed Conference Publications
Imtiaz, M., Smith, D.W. and Van Helden, D. (2004) Voltage coupled calcium stores with voltage dependent inositol 1,4,5-triphosphate synthesis interact as a system of weakly coupled oscillators, Biomed 2004, Kuala Lumpur, Malaysia.
P. Pivonka, Ch. Hellmich, and D. Smith, Origin of chloride diffusivity of cement pastes - a scale transition analysis, In V.C. Li, Ch. K.Y. Leung, K.J. Willam, S.L. Billington, editors, Fracture Mechanics of Concrete Structures (5^th International Conference of Fracture Mechanics of Concrete and Concrete Structures, FRAMCOS-5, Vail, Colorado, USA, April 12-16, 2004), Ia-FraMCos, Vol. 1, pp 571-579, 2004.
P. Pivonka and D. Smith, Electro-hydrodynamic transport in porous materials, In R.J. Jardine, D.M. Potts, K.G. Higgins, editors, Advances in geotechnical engineering (Proceedings of The Skempton Conference organised by the Institution of Civil Engineers and held at the Royal Geographic Society, London, UK, March 29-31, 2004), Thomas Telford Publishing, London, UK, Vol. 1, pp 592-603, 2004.
Ewers, B. and Smith, D.W. (2004) "Electroosmosis as a means of consolidation: Practical or pipedream?" The 9th Australian New Zealand Conference on Geomechanics.
Ewers, B. and Smith, D.W. (2004) "One-dimensional modelling of secondary compression clay." The 9th Australian New Zealand Conference on Geomechanics.
Li J., Fityus, S.G., Smith, D.W. and Huang, W (2004) A Study of the Impact of Dessication Cracking of Soils on Performance of a Stiffened Slab Footing on Expansive Soils Sixth World Congress on Computational Mechanics in conjunction with Second Asian-Pacific Congress on Computational Mechanics, 5-10 September 2004, Beijing, China, pp. 1-9
MOE, H, Smith, D.W. and Fityus, S.G. (2004) "The In Situ Measurement of Permeability in Dry Granular Soils" 9th Australia New Zealand Conference on Geomechanics 8-11 February 2004, Auckland, New Zealand, pp. 689-695.
Fityus, S.G., Smith, S.G., Imre, E., Rajkai, K (2004) "Model Framework For Structure and Volume Changes In Cracking Expansive Clay Soils" 9th Australia New Zealand Conference on Geomechanics 8-11 February 2004, Auckland, New Zealand, pp. 598-604
Fityus, S.G., Crawter, D., Smith, D.W. (2004) Sensitivity of Neutron Probe Moisture Meter Measurements In Saline Soils 9th Australia New Zealand Conference on Geomechanics 8-11 February 2004, Auckland, New Zealand, pp. 275-281.
Li, J., Fityus, S.G., Smith, D.W. and Huang, W. (2004) "A study of the impact of dessication cracking on the performance of a stiffened slab footing on an expansive soil" In Proceedings of the MCCM IV Computational Mechanics Conference, Beijing, Tsinghua University Press and Springer-Verlag.
Conference Presentations - presenter is identified using bold letters
B.S. Gardiner, D.W. Smith, P. Pivonka, A.J. Grodzinsky. Transport of large molecules through articular cartilage subjected to dynamic load, 10^th Annual Scientific Meeting of the Australian & New Zealand Orthopaedic Research Society (ANZORS), Sydney, Australia, October 22-24, 2004.
B.S. Gardiner, D.W. Smith, P. Pivonka, A.J. Grodzinsky. Active transport of IGF-I through articular cartilage, The Annual Conference of Engineering and Physical Sciences in Medicine (EPSM 2004), Geelong, Australia, November 14-18, 2004.
P. Pivonka and D.W. Smith, Theoretical study of nanoscale electro-diffusion in clay soils. Special Symposium (Prof. Valliappan.s retirement from UNSW), Sydney, NSW, Australia, 21 February 2004. (invited)
P. Pivonka, Ch. Hellmich, D.W. Smith, Origin of chloride diffusivity of cement pastes - a scale transition analysis, 5^th International Conference of Fracture Mechanics of Concrete and Concrete Structures (FRAMCOS-5), Vail, Colorado, USA, April 12-16, 2004.
P. Pivonka and D.W. Smith, Electro-hydrodynamic transport in porous materials, A.W. Skempton Memorial Conference, Royal Geographic Society, London, UK, March 29-31, 2004. (invited)

2003

Refereed Journal Publications

Li, J., Smith, D.W. and Fityus, S.G (2003), "The effect of an gap between the access tube and the soil during neutron probe measurement" Australian Journal of Soil Research 41, 151-164.
Li, J., Smith, D.W., Fityus, S.G. and Sheng, D. (2003), "Numerical Analysis of Neutron Moisture Probe Measurements" ASCE International Journal of Geomechanics, 3(1), 11-20.
Sheng, D., Sloan, S.W., Gens, A. and Smith, D.W. (2003) Finite Element Formulation and Algorithms for Unsaturated Soils Part I: Theory. International Journal of Numerical and Analytical Methods in Geomechanics 27, 445-465.
Sheng, D., Smith, D.W., Sloan, S.W. and Gens, A. (2003) Finite Element Formulation for Unsaturated Soils Part II: Verification and Application. International Journal of Numerical and Analytical Methods in Geomechanics, 27, 467-490.
P. Pivonka, Verdana, R. Lackner, and H.A. Mang. (2003), Shapes of loading surfaces of concrete models and their influence on the peak load and the failure mode in structural analyses. International Journal of Engineering Science, 41(13-24), pp 1649-1665.
P. Pivonka and K. Willam.(2003), The effect of the third invariant in computational plasticity. Engineering Computations, 20(5/6), 741-753.
Refereed Conference Publications
Imtiaz, M. Smith D.W. and Van Helden, D. (2003) Voltage dependence of slow waves in smooth muscle , World Congress on Medical Physics and Biomedical Engineering, Sydney , Aug 2003.
J. Ozbolt, I. Kozar, and P. Pivonka, Influence of the material model on the objectivity of the 3D smeared fracture analysisumerical Analyses, In E. Onate and D.R.J. Owen, editors, CD-ROM Proceedings of the 7^th International Conference on Computational Plasticity (COMPLAS 2003), 16 Pages, Barcelona, Spain, April 7-10, 2003.
MOE, H., Fityus, S.G., LI, J. and Smith, D.W. (2003). Study of a Crack Network in a Residual Expansive Clay. Unsat.Asia. Osaka, Japan.
Smith, D.W. and Ewers. (2003) .Cavity-cavitation suppression at a crack in the surface of a solid with a diffuse-double layer. Australian Colloid and Interface Symposium, Sydney, Feb 16-19, 2003.
Fityus S. G. and Smith D. W., (2003) "Behaviour of a model footing on expansive clay." Accepted for inclusion in Unsat Asia 2003, the 2nd Asian Unsaturated Soils Conference, Osaka, April 2003.
Conference Presentations - presenter is identified using bold letters
D. Smith and P. Pivonka, Theoretical influence of the influence of a diffuse double-layer on Darcy.s law, IUTAM Symposium on the Mechanics of Physicochemical and Electromechanical Interactions in Porous Media, Rolduc, Kerkrade, The Netherlands, May 18-23, 2003. (invited)

2002

Refereed Journal Publications

McGrath, S, Mclean, M, Smith, D, Bisits, A, Giles, W & Smith R (2002), Maternal plasma corticotropin-releasing hormone trajectories vary depending on the cause of preterm delivery, American Journal of Obstetrics and Gynecology, 186(2), 257-60.
Imtiaz, M, Smith, DW & VanHelden, DF (2002), A theoretical model of slow wave regulation using voltage dendent synthesis of inositol 1,4,5 phosphate. Biophysical Journal, Vol 83, 1877-1890.
McGrath S, McLean M, Smith D, Bisits A, Giles W, Smith R. (2002) Maternal plasma corticotropin-releasing hormone trajectories vary depending on the cause of preterm delivery. American Journal of Obstetrics and Gynecology. 2002 186(2):257-60.
Imtiaz, M., Smith, D.W., Van-Helden, D.F. (2002) A theoretical model of slow wave regulation using voltagedependent synthesis of inositol 1,4,5triphosphate. Biophysical Journal, Vol 83 p. 1877-1890.
Sheng, D. and Smith, D.W., (2002), "2-D Finite Element Analysis of Multicomponent Contaminant Transport", ASCE International Journal of Geomechanics Vol. 2 No.1 p. 113-134.
Peters, G. and Smith, D.W. (2002), "Contaminant Transport Through a Deforming Porous Media" International Journal of Numerical and Analytical Methods in Geomechanics Vol. 26. p. 683-717.
Smith, D.W. and Fletcher, H (2002) "Reactive Walls: an overview" Australian Geomechanics, Vol. 37 No. 4 p. 85-98.
Sheng, D., Smith, D.W., and Sloan, S.W. (2002), "An explicit stress integration scheme for unsaturated soils" Proceedings of the Third International Conference on Unsaturated Soils, Recife, Brazil Vol 1 p. 125.131.
Li, J., Smith, D.W., Fityus, S.G. and Sheng, D. (2002), "Quantitative Analysis of Moisture Content Determination in Expansive Soils Using Neutron Probes" Proceedings of the Third International Conference on Unsaturated Soils, Recife, Brazil Vol 1 p. 363.368.
Fityus, S.G., Dobson, N. and Smith, D.W. (2002), "A study of the variability in ground movements for an expansive clay site" Proceedings of the Third International Conference on Unsaturated Soils, Recife, Brazil Vol 2 p. 611.616.
Ewers, B., Smith, D.W. and Fityus, S.G. (2002) "Electro-osmotic testing of Ballina Clay" International Workshop on GeoEnvironmental Engineering, June30 - July5, Ascona, Switzerland. Proceedings, Environmental Geomechanics. Pub. EPFL Press. p. 295-302.
Peters, G.P. and Smith, D.W., (2002), "The influence of solute advection on coupled chemical and mechanical consolidation" Poromechanics II, Grenoble, Eds Auriault J-L, Geindreau, C., Royer, P., Bloch, J-F, Boutin, C. and Lewandowska, J, Pub. Balkema. p. 281-286.
Ewers, B. and Smith, D.W., (2002), "Electro-osmosis: numerical analysis of test results" Poromechanics II, Grenoble, Eds Auriault J-L, Geindreau, C., Royer, P., Bloch, J-F, Boutin, C. and Lewandowska, J, Pub. Balkema. p. 425-430.
P. Pivonka, R. Lackner, H.A. Mang, Failure assessment of anchor bolts by means of nonlinear finite element analyses, Analytical and Computational Fracture Mechanics of Non-Homogeneous Materials, B.L. Karihaloo, International Union for Theoretical and Applied Mechanics, pp 387-394, Kluwer Acadamic Publishers (2002).
J. Ozbolt, P. Pivonka, and R. Lackner, Three-dimensional FE analyses of fracture of concrete . material models and mesh sensitivity, In H.A. Mang, F.G. Rammersdorfer and J. Eberhardsteiner, editors, CD-ROM Proceedings of the 5^th World Congress on Computational Mechanics (WCCM V), 14 Pages, Vienna, Austria, July 7-12, 2002.

2001

Refereed Journal Publications

Smith, D.W. (2001), "Granular Temperature" ASCE International Journal of Geomechanics Vol. 1 No. 1 p. 41.64.
Peters, G. and Smith, D.W. (2001), "Boundary Conditions for the Advection.Dispersion Equation". International Journal of Numerical and Analytical Methods in Geomechanics, Vol. 25, No. 7 Published Online: 4 May 2001.
Fityus, S. G. and Smith, D. W. (2001), "Solution Of The Unsaturated Soil Moisture Equation Using Repeated Transforms". International Journal for Numerical and Analytical Methods in Geomechanics, Vol. 25, No. 7 Published Online: 4 May 2001.
Refereed Conference Publications
Sheng, D., Lewis, T. and Smith, D.W. (2001) "Effects of equilibria and kinetics on contaminant transport". APCOM.01 (Asia.Pacific Conference on Computational Mechanics) Eds. Valliapan, S. and Khalili, N. Pub. Elsevier. p. 789.794.
Sheng, D., Smith, D.W. and Sloan, S.W. (2001) "Alternative finite element formulation for unsaturated soils" APCOM.01 (Asia.Pacific Conference on Computational Mechanics) Eds. Valliapan, S. and Khalili, N. Pub. Elsevier. p. 1389.1394.
Smith, D.W. and Fletcher, H. (2001) "Modelling the sorption of fluoride onto alumina" Environmental Geotechnics, Proceedings of the 2nd ANZ Geoenvironmental Conference, Newcastle Eds. Smith D.W., Fityus, S.G. and Allman, M.A. Published by the Australian Geotechnical Society, p. 546.551.
Robinson, F. and Smith, D.W. (2001) "The use of granulated rubber as an alternative to the use of activated carbon for the removal of aqueous phase organics" Environmental Geotechnics, 2nd ANZ Geoenvironmental Conference, Newcastle Eds. Smith D.W., Fityus, S.G. and Allman, M.A. Published by the Australian Geotechnical Society, p. 553.558.
Lewis, T., Smith, D.W. and Sheng, D (2001) "Numerical analysis of an in-situ remediation scheme for flouride contaminated aquifer" Environmental Geotechnics, 2nd ANZ Geoenvironmental Conference, Newcastle Eds. Smith D.W., Fityus, S.G. and Allman, M.A. Published by the Australian Geotechnical Society, p. 197.202.
Jungnickel, C., Jennar, A., Fityus, S.G. and Smith, D.W. (2001) "Diffusion analysis of ultrafitration membranes" Environmental Geotechnics, 2nd ANZ Geoenvironmental Conference, Newcastle Eds. Smith D.W., Fityus, S.G. and Allman, M.A. Published by the Australian Geotechnical Society, p. 353.359.
Fityus S. G. and Smith D. W., (2001) "The development of expansive potential in a clay soil of residual origin." Proc. Chemo-Mechanical Coupling in Clays, Maratea, June 2001. 273-282.
H.A. Mang, R. Lackner, P. Pivonka, Ch. Schranz, Selected topics in computational structural mechanics, Trends in Computational Structural Mechanics, W.A. Wall, K.-U. Bletzinger, K. Schweizerhof, pp 1-25, CIMNE (2001).
Pivonka, R. Lackner, H.A. Mang, Numerical investigations of headed studs with inclined shoulders, RILEM International Symposium Connections between Steel and Concrete, Stuttgart, Germany, September 10-12, 2001, R. Eligehausen, 2, pp 729-746, RILEM Publications S.A.R.L. (2001).

2000

Refereed Journal Publications

Smith, D.W., (2000), "One-dimensional Contaminant Transport Through a Deforming Porous Media: Theory and a Solution for a Quasi-steady-state Problem", International Journal of Numerical and Analytical Methods in Geomechanics Vol. 24, p. 693.722.
Smith, D.W. (2000) "Geotechnical Design and Numerical Modelling" Australian Geomechanics, Vol. 35, No.4, p. 7.32.
Refereed Conference Publications
McGrath, S. McLean, M. Smith D.W. and Smith R. (2000) Individual Corticotropinreleasing hormone (CRH) trajectories during pregnancy depend on the presence of type of preterm delivery, International Society of Endocrinology Conference, Sydney, Oct 2000.
Fityus, S. G. and Smith, D. W., (2000) "Surface Area Using Methylene Blue Adsorption as a Measure of Soil Expansivity". Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Peters, G.P. and Smith, D.W., (2000), "Boundary conditions for the advection.dispersion equation" Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Peters, G.P. and Smith, D.W., (2000), "Spatially and temporally varying dispersivity" Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Parker, F., Smith, D.W., Hitchcock, P.W. (2000) "Alternative uses for recycling car tyres: remediation of contaminated groundwater", submitted to the Fifth Australian Waste Convention, Sydney.
Reitsma, M., Cain, R., Smith, D.W., Page, N. and BIGGS, S., (2000) "Frictional properties of quartz surfaces using the atomic force microscope" Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Fletcher, H. and Smith, D.W., (2000), "An algorithm for computing the sorption of fluoride onto alumina" Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Binning, P., Kau, P.M.H., BellL, L.S.J., Smith, D.W. and Kuczera, G.A. (2000) Fluoride transport in clay barriers; interpretation of laboratory batch and diffusion cell experiments. Conference titled Towards better management of wastes and contaminated sites in the Australasia.Pacific region, Adelaide, p. 116.118.
Jungnickel, C., Smith, D.W., (2000), "Diffusion through partially saturated clay soils" Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Slatter, E.E., Allman, M.A. and Smith, D.W., (2000), "Suction controlled testing of unsaturated soil with an osmotic oedometer", Paper published on CD ROM for the International Conference GEOENG 2000, Melbourne.
Parker, F., Smith, D.W., Hitchcock, P.W. and Anderson, G., (2000) "Adsorption of dissolved contaminants using coke breeze, granulated rubber and activated carbon", Accepted for the Waste Contamination.Remediation Technologies Conference, Melbourne.
Slatter, E., Jungnickel, C., Smith, D.W., Allman, M.A. (2000), "Osmotic Suction" Paper published in UNSAT.ASIA: Singapore.
Fityus, S.G. and Smith, D.W. (2000), "The influence of fabric and mineralogy on the expansivity of an Australian residual clay soil" Paper published in Unsaturated Soils; UNSAT.ASIA: Singapore.